jaligner software package provides Smith-Waterman algorithm with Gotohs improvement, you can install in your Ubuntu 16.04 LTS (Xenial Xerus) by running the commands given below on the terminal,
$ sudo apt-get update $ sudo apt-get install jaligner
jaligner is installed in your system.
Make ensure the jaligner package were installed using the commands given below,
$ sudo dpkg-query -l | grep jaligner *
You will get with jaligner package name, version, architecture and description in a table
| Distro | Ubuntu 16 04 lts xenial xerus |
| Section | Science |
| Package | jaligner |
| Version | 1.0+dfsg-1 |
| Description | Smith-Waterman algorithm with Gotohs improvement |
| Sub Section | Science |
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